Mudharabah, musyarakah, and murabahah financing in Islamic Banks besides generating profit it also creates problem in financing which will influence Return On Asset profitability level in Islamic Banks. The research aimed at learning respective risk effect in mudharabah, musyarakah, and murabahah financing toward profitability level of Islamic Banks. The research method is quantitative using time series data of 2009-2017. The analysis used in the researchin Vector Auto Regression with Eviews 8 which explains long and short term of respective variable with risk measurement using Value At Risk. The variables used are mudharabah, musyarakah, and murabahah VaR toward Return On Asset profitability of Islamic banking in Indonesia. The research result indicated that mudharabah VaR risk level had positive effect toward profitability level (ROA), meanwhile musyarakah and murabahah VaR had negative effect toward profitability level (ROA). In order to minimize the risk that might occur, Islamic Banks must improve the prudential principles and improve the risk management.